Recipes¶

Packaged workflows under recipes/bio/ — same automation as YAML workflows, with metadata for discovery.

Recipe	Folder	Workflow
`biomodels-discovery`	`recipes/bio/biomodels-discovery/`	Discovery pipeline → shortlist
`biomodels-research`	`recipes/bio/biomodels-research/`	Full research workflow
`biomodels-simulate`	`recipes/bio/biomodels-simulate/`	Baseline simulation
`biomodels-perturb`	`recipes/bio/biomodels-perturb/`	Perturbation study
`biomodels-report`	`recipes/bio/biomodels-report/`	Comparison report

Each folder contains recipe.yaml pointing at a workflow under workflows/discovery/.

Run (recommended)¶

Recipes wrap existing workflows — run the workflow directly:

cd PraisonAIBio
python -c "import praisonai_bio"

# Discovery shortlist
praisonai workflow run workflows/discovery/biomodels_discovery_pipeline.yaml

# Full research (7 phases)
praisonai workflow run workflows/discovery/biomodels_full_research_workflow.yaml

# Baseline simulation
praisonai workflow run workflows/discovery/biomodels_baseline_simulation.yaml

# Perturbation study
praisonai workflow run workflows/discovery/biomodels_perturbation_study.yaml

# Comparison report
praisonai workflow run workflows/discovery/biomodels_comparison_report.yaml

Recipe path (optional)¶

Point PraisonAI at the recipe catalog:

export PRAISONAI_RECIPE_PATH="$(pwd)/recipes/bio"

Then use PraisonAI recipe commands if your wrapper version supports them; otherwise use the workflow paths above.

Cookbooks¶

Ready-made demos in workflows/cookbooks/:

praisonai workflow run workflows/cookbooks/glycolysis_demo.yaml
praisonai workflow run workflows/cookbooks/mapk_p53_discovery.yaml

Demo model: BIOMD0000000206 (yeast glycolysis).

See Workflows and For researchers.