Example — Agent finds models¶
Category: Big (AI agent) · Script: examples/big/01_find_models.py
Minimal (2 lines): examples/minimal/agent.py
Agent searches BioModels for curated yeast glycolysis models.
How to run¶
pip install -e "src/praisonai-bio"
export OPENAI_API_KEY=sk-...
python examples/big/01_find_models.py
Needs: Internet + OpenAI API key.
Tested output¶
Live capture from ./scripts/capture_example_outputs.sh.
Click to view full output
Here are some curated models related to yeast glycolysis available in the BioModels database:
1. **[Smallbone2013 - Yeast metabolic model with linlog rate law](https://www.biomodels.org/BIOMD0000000471)**
- Submission Date: February 14, 2013
- Submitter: Kieran Smallbone
- Format: SBML
2. **[Smallbone2013 - Yeast metabolic model with modular rate law](https://www.biomodels.org/BIOMD0000000472)**
- Submission Date: February 14, 2013
- Submitter: Kieran Smallbone
- Format: SBML
3. **[Smallbone2013 - Yeast metabolic model with modular rate law, merged with Pritchard 2002](https://www.biomodels.org/BIOMD0000000473)**
- Submission Date: February 14, 2013
- Submitter: Kieran Smallbone
- Format: SBML
4. **[Wolf2000 - Cellular interaction on glycolytic oscillations in yeast](https://www.biomodels.org/BIOMD0000000691)**
- Submission Date: June 23, 2010
- Submitter: Camille Laibe
- Format: SBML
5. **[Teusink2000_Glycolysis](https://www.biomodels.org/BIOMD0000000064)**
- Submission Date: August 14, 2006
- Submitter: Nicolas Le Nôtre
- Format: SBML
These models are manually curated, which ensures a higher level of reliability and accuracy. Let me know if you need more information on any specific model!