Example — Agent finds models¶
Category: Big (AI agent) · Script: examples/big/01_find_models.py
Minimal (2 lines): examples/minimal/agent.py
Agent searches BioModels for curated yeast glycolysis models.
How to run¶
pip install -e "src/praisonai-bio"
export OPENAI_API_KEY=sk-...
python examples/big/01_find_models.py
Needs: Internet + OpenAI API key.
Tested output¶
Live capture from ./scripts/capture_example_outputs.sh.
Click to view full output
Here are some curated models related to yeast glycolysis:
1. **[Smallbone2013 - Yeast metabolic model with linlog rate law](https://www.biomodels.org/BIOMD0000000471)**
- **ID**: BIOMD0000000471
- **Submitter**: Kieran Smallbone
- **Submission Date**: 2013-02-14
2. **[Smallbone2013 - Yeast metabolic model with modular rate law](https://www.biomodels.org/BIOMD0000000472)**
- **ID**: BIOMD0000000472
- **Submitter**: Kieran Smallbone
- **Submission Date**: 2013-02-14
3. **[Smallbone2013 - Yeast metabolic model with modular rate law, merged with Pritchard 2002](https://www.biomodels.org/BIOMD0000000473)**
- **ID**: BIOMD0000000473
- **Submitter**: Kieran Smallbone
- **Submission Date**: 2013-02-14
4. **[Wolf2000 - Cellular interaction on glycolytic oscillations in yeast](https://www.biomodels.org/BIOMD0000000691)**
- **ID**: BIOMD0000000691
- **Submitter**: Camille Laibe
- **Submission Date**: 2010-06-23
5. **[Teusink2000_Glycolysis](https://www.biomodels.org/BIOMD0000000064)**
- **ID**: BIOMD0000000064
- **Submitter**: Nicolas Le Novère
- **Submission Date**: 2006-08-14
These models focus on different aspects of glycolysis in yeast and can be accessed through the provided links. Feel free to ask if you need more information!