CLI¶

praisonai-bio¶

pip install -e "src/praisonai-bio"
praisonai-bio init              # scaffold .praisonai/config.yaml + agents
praisonai-bio validate check    # package + toolsets OK
praisonai-bio validate repo     # full plan compliance (scripts/validate_repo.py)
praisonai-bio tools validate    # 21 entry points
praisonai-bio doctor mcp        # MCP + BASICO check

PraisonAI wrapper¶

Correct patterns (not praisonai agent run):

praisonai run --agent biomodels-scout "Find glycolysis models"
praisonai workflow run workflows/cookbooks/glycolysis_demo.yaml
praisonai workflow run workflows/discovery/biomodels_discovery_pipeline.yaml
praisonai workflow run workflows/platform/policy_guarded_simulation.yaml

Requires pip install praisonai and python -c "import praisonai_bio".

MCP servers¶

python mcp/sysbio-server/server.py       # 11 T2B tools
python mcp/biomodels-server/server.py    # read-only BioModels
praisonai-bio-mcp                        # console entry (if installed)

See MCP.

Docs site¶

pip install -r docs/requirements.txt
mkdocs serve    # http://127.0.0.1:8000
mkdocs build    # output in site/

Live site: https://bio.praison.ai