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PraisonAIBio

Open source · Systems biology

Discover, simulate, and compare curated models from BioModels.org with AI agents powered by PraisonAI.

Built for biologists and lab scientists — no heavy coding required.

Get started Browse examples Interactive guide

Start here

  • Get started

    Install, run your first search, optionally try an AI agent.

    Get started

  • Examples

    Minimal scripts, tool demos, and agent walkthroughs with tested output.

    Examples

  • Interactive guide

    Choose a path: discovery, simulation, or reproducibility.

    Interactive guide

  • Tools

    28 BioModels tools for search, simulation, comparison, and export.

    Tools at a glance

  • Workflows

    YAML cookbooks and multi-step discovery pipelines.

    Workflows

  • For researchers

    Plain-language guide for lab scientists and modellers.

    For researchers

How it works

flowchart LR
    Q(["Your question"]) --> A["AI agent"]
    A --> B[("BioModels.org")]
    A --> R["Report or simulation"]
  1. Ask a question in plain English.
  2. The agent searches BioModels.org.
  3. You receive a shortlist, summary, or simulation preview.

Try in 30 seconds

pip install -e "src/praisonai-bio"
python examples/minimal/search.py

pip install -e "src/praisonai-bio"
python examples/small/01_search.py

export OPENAI_API_KEY=sk-...
python examples/big/01_find_models.py

praisonai workflow run workflows/cookbooks/glycolysis_demo.yaml