Quick tasks¶

Pick a task. Copy the command. Run it.

Guides: Minimal examples · Interactive guide

Task 1 — Find models¶

python examples/minimal/search.py

Task 2 — Inspect one model¶

Question: “What is BIOMD0000000206?”

python examples/small/02_model_info.py

Demo model: Teusink yeast glycolysis.

Task 3 — Is this model trustworthy?¶

Question: “Is this model curated and published?”

python examples/small/03_trust_score.py

Task 3b — Validate SBML structure¶

Question: “Is BIOMD0000000206 structurally valid?”

python examples/small/04_validate_sbml.py

Task 4 — Let AI search for you¶

Question: “Find MAPK models for me.”

export OPENAI_API_KEY=sk-...
python examples/big/01_find_models.py

Task 5 — Full discovery study¶

Question: “Which model should I use for MAPK signalling?”

export OPENAI_API_KEY=sk-...
python examples/big/03_discovery_study.py

Task 6 — Glycolysis demo (agent)¶

export OPENAI_API_KEY=sk-...
python examples/big/04_glycolysis_demo.py

Task 6b — Agent summarises one model¶

export OPENAI_API_KEY=sk-...
python examples/big/02_summarise_model.py

Task 7 — Workflow file (multi-step team)¶

No Python — uses PraisonAI workflow YAML:

praisonai workflow run workflows/cookbooks/glycolysis_demo.yaml

Agents work in sequence: find → summarise → simulate.

Task 8 — Reproducibility bundle¶

python -c "
import praisonai_bio
from praisonai_bio.tools.repro_export import repro_export
print(repro_export.run(model_id='BIOMD0000000206', output_dir='/tmp/glycolysis_bundle'))
"

Creates model.sbml, metadata, and commands.sh in the folder.

Task 9 — Policy-guarded simulation (workflow)¶

export OPENAI_API_KEY=sk-...
python -c "import praisonai_bio"
praisonai workflow run workflows/platform/policy_guarded_simulation.yaml

See Workflows — Platform.