Model graph

Turn SBML into a reaction graph for assumption review and reporting.

Tool

import praisonai_bio
print(praisonai_bio.sbml_to_graph.run(model_id="BIOMD0000000206"))

CLI via agent toolset sbml_analysis or sysbio-full.

Graph JSON shape

{
  "model_id": "BIOMD0000000206",
  "nodes": [{"id": "s1", "type": "species"}],
  "edges": [{"source": "s1", "target": "v1", "role": "reactant"}],
  "counts": {"species": 15, "reactions": 10}
}

Example

python examples/small/10_sbml_graph.py

Docs: 10 — SBML graph

Used in workflows/cookbooks/full_platform_pipeline.yaml (Graph pillar).