Example — Search BioModels¶
Category: Small (no AI) · Script: examples/small/01_search.py
Minimal (2 lines): examples/minimal/search.py
Search curated glycolysis models on BioModels.org.
How to run¶
pip install -e "src/praisonai-bio"
python examples/small/01_search.py
Needs: Internet. No API key.
Tested output¶
Live capture from ./scripts/capture_example_outputs.sh.
Click to view full output
{
"query": "glycolysis AND curationstatus:\"Manually curated\"",
"count": 10,
"models": [
{
"format": "SBML",
"id": "BIOMD0000000471",
"lastModified": null,
"name": "Smallbone2013 - Yeast metabolic model with linlog rate law",
"submissionDate": "2013-02-14T00:00:00Z",
"submitter": "Kieran Smallbone",
"url": "https://www.biomodels.org/BIOMD0000000471"
},
{
"format": "SBML",
"id": "BIOMD0000000472",
"lastModified": null,
"name": "Smallbone2013 - Yeast metabolic model with modular rate law",
"submissionDate": "2013-02-14T00:00:00Z",
"submitter": "Kieran Smallbone",
"url": "https://www.biomodels.org/BIOMD0000000472"
},
{
"format": "SBML",
"id": "BIOMD0000000473",
"lastModified": null,
"name": "Smallbone2013 - Yeast metabolic model with modular rate law, merged with Pritchard 2002",
"submissionDate": "2013-02-14T00:00:00Z",
"submitter": "Kieran Smallbone",
"url": "https://www.biomodels.org/BIOMD0000000473"
},
{
"format": "SBML",
"id": "BIOMD0000000469",
"lastModified": null,
"name": "Smallbone2013 - E.coli metabolic model with linlog rate law",
"submissionDate": "2013-02-14T00:00:00Z",
"submitter": "Kieran Smallbone",
"url": "https://www.biomodels.org/BIOMD0000000469"
},
{
"format": "SBML",
"id": "BIOMD0000000470",
"lastModified": null,
"name": "Smallbone2013 - E.coli metabolic model with modular rate law",
"submissionDate": "2013-02-14T00:00:00Z",
"submitter": "Kieran Smallbone",
"url": "https://www.biomodels.org/BIOMD0000000470"
},
{
"format": "SBML",
"id": "BIOMD0000000428",
"lastModified": null,
"name": "Achcar2012 - Glycolysis in bloodstream form T. brucei",
"submissionDate": "2012-09-13T00:00:00Z",
"submitter": "Lukas Endler",
"url": "https://www.biomodels.org/BIOMD0000000428"
},
{
"format": "SBML",
"id": "BIOMD0000000513",
"lastModified": null,
"name": "Kerkhoven2013 - Glycolysis in T.brucei - MODEL A",
"submissionDate": "2014-01-31T00:00:00Z",
"submitter": "Vijayalakshmi Chelliah",
"url": "https://www.biomodels.org/BIOMD0000000513"
},
{
"format": "SBML",
"id": "BIOMD0000000503",
"lastModified": null,
"name": "Messiha2013 - combined glycolysis and pentose phosphate pathway model",
"submissionDate": "2013-11-29T00:00:00Z",
"submitter": "Kieran Smallbone",
"url": "https://www.biomodels.org/BIOMD0000000503"
},
{
"format": "SBML",
"id": "BIOMD0000000482",
"lastModified": null,
"name": "Noguchi2013 - Insulin dependent glucose metabolism",
"submissionDate": "2013-01-02T00:00:00Z",
"submitter": "Rei Noguchi",
"url": "https://www.biomodels.org/BIOMD0000000482"
},
{
"format": "SBML",
"id": "BIOMD0000000172",
"lastModified": null,
"name": "Pritchard2002_glycolysis",
"submissionDate": "2008-05-20T00:00:00Z",
"submitter": "Nicolas Le Nov\u00e8re",
"url": "https://www.biomodels.org/BIOMD0000000172"
}
]
}