Notebooks¶
Jupyter notebooks for interactive systems biology workflows.
| Notebook | Topic |
|---|---|
| 01_search_rank.ipynb | Search and rank BioModels |
| 02_sbml_graph.ipynb | SBML summarise and reaction graph |
| 03_simulate_glycolysis.ipynb | Baseline simulation (BASICO) |
| 04_perturb_compare.ipynb | Perturbation and comparison |
| 05_repro_bundle.ipynb | Repro bundle export |
Convert a notebook to repro metadata:
python scripts/notebook_to_repro.py examples/notebooks/05_repro_bundle.ipynb